B-cell phylodynamics

Date
Tue December 5th 2023, 4:30pm
Location
Sloan 380C
Speaker
Steven Evans, UC Berkeley

Germinal centers (GC) are micro-anatomical structures that transiently form in lymph nodes during an adaptive immune response. In a GC, B-cells — the cells that make antibodies — diversify and compete based on the ability of the antibodies they express to recognize a foreign antigen molecule. As GC B-cells proliferate, they undergo targeted mutations in the genomic locus encoding the antibody protein that can modify its antigen binding affinity. Via signaling from other GC cell types, the GC can monitor the binding phenotype of the B-cell population it contains and provide survival signals to B-cells with the highest-affinity antibodies (i.e., birth and death rates depend on type). Motivated by this mechanism, we develop a mean-field model that couples the birth and death rates in a focal multi-type birth and death process (MTBDP) with d types to the empirical distribution of states, i.e., the mean-field over an exchangeable system of N replica MTBDPs. The empirical distribution process of the N replicas converges to a deterministic probability measure-valued flow as N goes to infinity. In the limit, the focal process evolves as a multi-type birth and death process with rates governed by the probability measure-valued flow which is in turn the flow of one-dimensional marginal distributions of the focal process.  Individual focal processes become independent in the limit and this holds out the hope of inference being feasible for this model.

This is joint work with William S. DeWitt, Ella Hiesmayr, and Sebastian Hummel.